Supplementary Material for publication "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosalia} and Marmoset Callithrix sp. Metagenomic Shotgun Pools

Analysis of gut microbiome profiles in common marmosets (Callithrix jacchus) in health and intestinal disease

Sheh, Alexander
Artim, Stephen C.
Burns, Monika A.
Molina Mora, José Arturo
Lee, Mary Anne
Dzink-Fox, JoAnn
Muthupalani, Sureshkumar
Fox, James G.

March 2022

Chronic gastrointestinal (GI) diseases are the most common diseases in captive common marmosets. To ...

Changes in the faecal microbiome of pied tamarins (Saguinus bicolor) associated with chronic, recurrent diarrhoea and weight loss

Richards-Rios, Peter
Wigley, Paul
Lopez, Javier
Wormell, Dominic
Barbon, Alberto

January 2021

BackgroundChronic recurrent diarrhoea and weight loss is a common problem in captive callitrichids. ...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Supplementary Material for publication "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosalia} and Marmoset Callithrix sp. Metagenomic Shotgun Pools

Joanna Malukiewicz
Mirela D'arc
Cecilia A Dias
Reed A. Cartwright
Adriana D. Grativol
Silvia Bahadian Moreira
Antonizete R Souza
Maria Clotilde Henriques Tavares
Alcides Pissinatti
Carlos R. Ruiz-Miranda
André F. A. Santos

August 2023

Supplementary Tables and Figure for the publication "Bifidobacteria Define Gut Microbiome Profiles o...

Expanding our knowledge on bifidobacteria in primates

MATTARELLI, PAOLA
MODESTO, MONICA MARIANNA

January 2017

The aim of th epresent study is to describe the bifidobacterial species biodiversity in non-human p...

Additional file 2: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of the bacteria in the Amur tiger metagenome. (DOCX 537 kb

Exploring Signatures of Host-Microbial Coevolution Between Colonic Bifidobacterium Species and Host Dietary Carbohydrates

Albert, Korin

February 2020

The human body is covered in trillions of microbes that interface with our own cells. A majority of ...

The gut microbiome of exudivorous marmosets in the wild and captivity

Malukiewicz, Joanna
Cartwright, Reed
Dergam, Jorge A.
Igayara, Claudia S.
Kessler, Sharon E.
Moreira, Silvia B.
Nash, Leanne T.
Nicola, Patricia A.
Pereira, Luiz C. M.
Pissinatti, Alcides
Ruiz-Miranda, Carlos R.
Ozga, Andrew T.
Quirino, Adriana A.
Roos, Christian
Silva, Daniel L.
Stone, Anne C.
Grativol, Adriana D.

March 2022

Mammalian captive dietary specialists like folivores are prone to gastrointestinal distress and prim...

Presentation_1_Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet.pdf

Ravinder Nagpal (3419930)
Carol A. Shively (808217)
Susan A. Appt (5139446)
Thomas C. Register (553850)
Kristofer T. Michalson (5139449)
Mara Z. Vitolins (446505)
Hariom Yadav (5139443)

April 2018

<p>The mammalian gastrointestinal tract harbors a highly diverse and dynamic community of bacteria. ...

The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut

Albert, Korin
Rani, Asha
Sela, David A.

June 2018

Bifidobacterium is a diverse genus of anaerobic, saccharolytic bacteria that colonize many animals, ...

Occurrence of Bifidobacteriaceae in herbivorous primate Theropithecus gelada

Modesto M.
Sansosti M. C.
Perpetuini G.
Galloni D.
Policano G.
La Cauza G. F.
Sandri C.
Spiezio C.
Tofalo R.
Mattarelli P.

January 2017

Primates in general exhibit a wide dietary diversity, enabling them to occupy various ecological ni...

The bifidobacterial distribution in the microbiome of captive primates reflects parvorder and feed specialization of the host

Nikol Modrackova
Adam Stovicek
Johanna Burtscher
Petra Bolechova
Jiri Killer
Konrad J. Domig
Vera Neuzil-Bunesova

July 2021

Abstract Bifidobacteria, which commonly inhabit the primate gut, are beneficial contributors to host...

Intra-intestinal analysis of the functional activity of microbiomes and its application to the common marmoset intestine

Uehara, Mika
Inoue, Takashi
Kominato, Minori
Hase, Sumitaka
Sasaki, Erika
Toyoda, Atsushi
Sakakibara, Yasubumi

June 2022

Supplementary Table Captions: Table S4. Assignment of genes to unknown gene clusters Table S5. AUC...

Additional file 5: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of the viruses in the Amur tiger metagenome. (DOCX 43 kb

Additional file 4: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of Archaea in the Amur tiger metagenome. (DOCX 21 kb

Analysis of gut microbiome profiles in common marmosets (Callithrix jacchus) in health and intestinal disease

Sheh, Alexander
Artim, Stephen C.
Burns, Monika A.
Molina Mora, José Arturo
Lee, Mary Anne
Dzink-Fox, JoAnn
Muthupalani, Sureshkumar
Fox, James G.

March 2022

Chronic gastrointestinal (GI) diseases are the most common diseases in captive common marmosets. To ...

Changes in the faecal microbiome of pied tamarins (Saguinus bicolor) associated with chronic, recurrent diarrhoea and weight loss

Richards-Rios, Peter
Wigley, Paul
Lopez, Javier
Wormell, Dominic
Barbon, Alberto

January 2021

BackgroundChronic recurrent diarrhoea and weight loss is a common problem in captive callitrichids. ...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Supplementary Material for publication "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosalia} and Marmoset Callithrix sp. Metagenomic Shotgun Pools

Joanna Malukiewicz
Mirela D'arc
Cecilia A Dias
Reed A. Cartwright
Adriana D. Grativol
Silvia Bahadian Moreira
Antonizete R Souza
Maria Clotilde Henriques Tavares
Alcides Pissinatti
Carlos R. Ruiz-Miranda
André F. A. Santos

August 2023

Supplementary Tables and Figure for the publication "Bifidobacteria Define Gut Microbiome Profiles o...

Expanding our knowledge on bifidobacteria in primates

MATTARELLI, PAOLA
MODESTO, MONICA MARIANNA

January 2017

The aim of th epresent study is to describe the bifidobacterial species biodiversity in non-human p...

Additional file 2: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of the bacteria in the Amur tiger metagenome. (DOCX 537 kb

Exploring Signatures of Host-Microbial Coevolution Between Colonic Bifidobacterium Species and Host Dietary Carbohydrates

Albert, Korin

February 2020

The human body is covered in trillions of microbes that interface with our own cells. A majority of ...

The gut microbiome of exudivorous marmosets in the wild and captivity

Malukiewicz, Joanna
Cartwright, Reed
Dergam, Jorge A.
Igayara, Claudia S.
Kessler, Sharon E.
Moreira, Silvia B.
Nash, Leanne T.
Nicola, Patricia A.
Pereira, Luiz C. M.
Pissinatti, Alcides
Ruiz-Miranda, Carlos R.
Ozga, Andrew T.
Quirino, Adriana A.
Roos, Christian
Silva, Daniel L.
Stone, Anne C.
Grativol, Adriana D.

March 2022

Mammalian captive dietary specialists like folivores are prone to gastrointestinal distress and prim...

Presentation_1_Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet.pdf

Ravinder Nagpal (3419930)
Carol A. Shively (808217)
Susan A. Appt (5139446)
Thomas C. Register (553850)
Kristofer T. Michalson (5139449)
Mara Z. Vitolins (446505)
Hariom Yadav (5139443)

April 2018

<p>The mammalian gastrointestinal tract harbors a highly diverse and dynamic community of bacteria. ...

The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut

Albert, Korin
Rani, Asha
Sela, David A.

June 2018

Bifidobacterium is a diverse genus of anaerobic, saccharolytic bacteria that colonize many animals, ...

Occurrence of Bifidobacteriaceae in herbivorous primate Theropithecus gelada

Modesto M.
Sansosti M. C.
Perpetuini G.
Galloni D.
Policano G.
La Cauza G. F.
Sandri C.
Spiezio C.
Tofalo R.
Mattarelli P.

January 2017

Primates in general exhibit a wide dietary diversity, enabling them to occupy various ecological ni...

The bifidobacterial distribution in the microbiome of captive primates reflects parvorder and feed specialization of the host

Nikol Modrackova
Adam Stovicek
Johanna Burtscher
Petra Bolechova
Jiri Killer
Konrad J. Domig
Vera Neuzil-Bunesova

July 2021

Abstract Bifidobacteria, which commonly inhabit the primate gut, are beneficial contributors to host...

Intra-intestinal analysis of the functional activity of microbiomes and its application to the common marmoset intestine

Uehara, Mika
Inoue, Takashi
Kominato, Minori
Hase, Sumitaka
Sasaki, Erika
Toyoda, Atsushi
Sakakibara, Yasubumi

June 2022

Supplementary Table Captions: Table S4. Assignment of genes to unknown gene clusters Table S5. AUC...

Additional file 5: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of the viruses in the Amur tiger metagenome. (DOCX 43 kb

Additional file 4: of Metagenomic analysis of captive Amur tiger faecal microbiome

Fengping He (6039311)
Dan Liu (108669)
Le Zhang (88249)
Jiancheng Zhai (6039314)
Yue Ma (384284)
Yanchun Xu (4669951)
Guangshun Jiang (6039317)
Ke Rong (483203)
Jianzhang Ma (281406)

December 2018

Phylogenetic classification of Archaea in the Amur tiger metagenome. (DOCX 21 kb

Analysis of gut microbiome profiles in common marmosets (Callithrix jacchus) in health and intestinal disease

Sheh, Alexander
Artim, Stephen C.
Burns, Monika A.
Molina Mora, José Arturo
Lee, Mary Anne
Dzink-Fox, JoAnn
Muthupalani, Sureshkumar
Fox, James G.

March 2022

Chronic gastrointestinal (GI) diseases are the most common diseases in captive common marmosets. To ...

Changes in the faecal microbiome of pied tamarins (Saguinus bicolor) associated with chronic, recurrent diarrhoea and weight loss

Richards-Rios, Peter
Wigley, Paul
Lopez, Javier
Wormell, Dominic
Barbon, Alberto

January 2021

BackgroundChronic recurrent diarrhoea and weight loss is a common problem in captive callitrichids. ...

Additional file 2: of Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

Gabriele Lugli (3522308)
Christian Milani (133915)
Sabrina Duranti (133929)
Giulia Alessandri (6708905)
Francesca Turroni (133919)
Leonardo Mancabelli (3661636)
Danilo Tatoni (6708908)
Maria Ossiprandi (6708911)
Douwe Sinderen (4321051)
Marco Ventura (133957)

May 2019

Table S1. Metagenomic sequence data. Table S2. Predicted glycobiome of novel species. Table S3. ITS ...

Supplementary Material for publication "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosalia} and Marmoset Callithrix sp. Metagenomic Shotgun Pools

Abstract

Extracted data

Supplementary Material for publication "Bifidobacteria Define Gut Microbiome Profiles of Golden Lion Tamarin (Leontopithecus rosalia} and Marmoset Callithrix sp. Metagenomic Shotgun Pools

Abstract

Extracted data

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